PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009116129.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SRS
Protein Properties Length: 194aa    MW: 21568.3 Da    PI: 10.4191
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009116129.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF7021662.1e-51431844154
          DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 
                      ++ C+dCGn+akk+C +eRCRtCCksrg++CathvkstWvp+++ r+  +  +++ss+++++ + ++s+++++             +++++s++
  XP_009116129.1  43 EEKVCKDCGNRAKKECLFERCRTCCKSRGYNCATHVKSTWVPSSHHRSVSR-SSSSSSDRNKKLKLDSSDKPKSV----------LIVPTTTSRQ 126
                     6789****************************************9998433.33333333333444444444433..........3333334444 PP

          DUF702  99 ele.tsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
                     e++ +++lP +++++avf+++rv++v+  +++e++Yq+ v+i+GhvfkG+L+++G+++
  XP_009116129.1 127 ETSfKERLPGKIEAPAVFKRTRVTAVSSnEQAEIGYQANVTISGHVFKGFLHYYGVDH 184
                     4440345*******************875899************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.1E-4745183IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.1E-264687IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016245.9E-27133182IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MLGLRNTLFL NQPPSQITQP SPSPVNFTAA DVNNKSSRNS NVEEKVCKDC GNRAKKECLF  60
ERCRTCCKSR GYNCATHVKS TWVPSSHHRS VSRSSSSSSD RNKKLKLDSS DKPKSVLIVP  120
TTTSRQETSF KERLPGKIEA PAVFKRTRVT AVSSNEQAEI GYQANVTISG HVFKGFLHYY  180
GVDHNKSFPS LSNK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4468891e-65AF446889.1 Arabidopsis thaliana AT3g54430/T12E18_120 mRNA, complete cds.
GenBankAY0526751e-65AY052675.1 Arabidopsis thaliana AT3g54430/T12E18_120 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116129.11e-143PREDICTED: protein SHI RELATED SEQUENCE 6-like
SwissprotQ9M2U43e-94SRS6_ARATH; Protein SHI RELATED SEQUENCE 6
TrEMBLM4CS801e-141M4CS80_BRARP; Uncharacterized protein
STRINGBra007072.1-P1e-141(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM119592332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54430.17e-77SHI-related sequence 6